Search Immortality Topics:

Page 40«..1020..39404142..5060..»


RIT faculty member becomes fellow of the American Institute for Medical and Biological Engineering | RIT – Rochester Institute of Technology

Posted: April 4, 2024 at 2:42 am

Karin Wuertz-Kozak, a faculty researcher at Rochester Institute of Technology, was recently inducted into the American Institute for Medical and Biological Engineering (AIMBE) College of Fellows. Becoming an AIMBE Fellow, one of the organization's most prestigious honors, signifies inclusion among the top 2 percent of medical and biological engineers, representing the most accomplished individuals across academia, industry, education, clinical practice, and government.

Wuertz-Kozak, a Kate Gleason Endowed Professor in RITs Department of Biomedical Engineering, was recognized for her outstanding contribution to understanding the pathophysiology of degenerative disc disease and to developing new therapeutic strategies for disc disease. She brings an interdisciplinary background to her work with experience in pharmacology, biomedical engineering, and biology, as well as business administration. Her clinical collaborations are worldwide, spanning locally with the University of Rochester to the Fukushima Medical University in Japan.

Karin is conducting important research that will ultimately improve the quality of life for individuals suffering from degenerative disc disease, said Doreen Edwards, dean of RITs Kate Gleason College of Engineering.We are thrilled that she is being honored with this prestigious award.

Wuertz-Kozak is leading research on the role and effects of mechanical loading in the context of back pain. Understanding the mechanisms leading to degeneration and chronic inflammation can give clues to relieving disc-related back pain and is a crucial part of developing novel, molecular treatment options for patients, she said.

One promising approach being developed by her research team is to modulate and control tissue inflammation and induce regeneration is through extracellular vesicles (EVs) derived from CRISPR-modified stem cells. While stem cells have proven successful in the regeneration of many tissues, the intervertebral disc constitutes a drastically harsh cell environment, making EV therapy a promising alternative to cell therapy. To this end, she has received several significant research grants from prominent agencies such as the National Science Foundation and the National Institutes of Health.

A longtime member of several national and international associations, Wuertz-Kozak has held leadership positions with the International Society of the Study of the Lumbar Spine and the Orthopedic Research Society. Among her many academic achievements, Wuertz-Kozak has been recognized by the Swiss National Science Foundation Professorship Award in 2016 and received a Faculty Scholarship Award as part of RITs Kate Gleason College of Engineering in 2021. She has published more than 90 peer-reviewed articles and has contributed to numerous journals related to molecular science and biomedical engineering in editorial roles and as a reviewer.

AIMBE Fellows are employed in academia, industry, clinical practice, and government., and consist of distinguished medical and biological engineers including three Nobel Prize laureates and 22 Presidential Medal of Science and/or Technology and Innovation awardees. Each has led initiatives to pioneer new and developing fields of technology, making major advancements in traditional fields of medical and biological engineering, or developing/implementing innovative approaches to bioengineering education.

Read more:
RIT faculty member becomes fellow of the American Institute for Medical and Biological Engineering | RIT - Rochester Institute of Technology

Recommendation and review posted by G. Smith

Sherry Gao pushes the boundaries of genetic engineering | Penn Today – Penn Today

Posted: April 4, 2024 at 2:42 am

Sherry (Xue) Gao, Presidential Penn Compact Associate Professor in Chemical and Biomolecular Engineering (CBE)in the School of Engineering and Applied Science, always knew she had a future in the lab. I grew up in China, and when I was little, maybe 6 or 7, she recalls, my teacher asked me, What do you want to be when you grow up? I said, I want to be a scientist.

Neither of her parents had studied beyond high school; when Gao finished her training as a chemical engineer, she became the first person in her family to graduate from college. One of my greatest motivations is to help first-generation college students, Gao says.

Now, as the newest faculty member in CBE, Gao is prepared to do just that: support the next generation of chemical engineers, while also conducting groundbreaking research in the development of small molecules to edit genes, pushing the boundaries of precision medicine.

One of Gaos primary goals is to make gene-editing tools more accurate. As Gao points out, CRISPR, the revolutionary technology developed by Nobel Prize winners Jennifer Doudna and Emmanuelle Charpentier, doesnt always work perfectly. The tool goes in, fixes a mutation, but we also observe a lot of off-targets, Gao says. So its not just hitting the target letters in our genetic code, its sometimes editing other places. You could cure one genetic disease by using the CRISPR tools, but then the off-targets could cause dozens of other problems.

More generally, Gao is fascinated by enzymes, the class of molecules to which CRISPR belongs, which enable chemical reactions by lowering the activation energy required for a reaction to take place. Enzymes typically catalyze molecules in a very precise fashion, says Gao. Thats sort of my passion: to look into how nature makes some molecules so accurate, and how we as humans and engineers can learn from that.

This story is by Ian Scheffler. Read more at Penn Engineering Today.

Continued here:
Sherry Gao pushes the boundaries of genetic engineering | Penn Today - Penn Today

Recommendation and review posted by G. Smith

Bioengineering of vascularized porcine flaps using perfusion-recellularization | Scientific Reports – Nature.com

Posted: April 4, 2024 at 2:42 am

Animal use

Yorkshire pigs (3040kg; age approximately 12weeks old) were used for all decellularization and recellularization experiments. All studies were approved by the Institutional Animal Care and Use Committee (IACUC) of the University Health Network and Toronto General Hospital Research Institute. Humane care was provided to all animals in accordance to the Principles of Laboratory Animal Care defined by the National Society for Medical Research and the Guide for the Care of Laboratory Animals issued by the National Institutes of Health. Reporting of use of experimental animals in this study followed recommendations specified by the ARRIVE guidelines.

Pigs were fasted for 12h prior to surgery. Sedation was achieved with ketamine (20mg/kg IM), atropine (0.04mg/kg IM) and midazolam (0.3mg/kg IM). Anesthesia was induced by inhalation of 5% isoflurane through a mask at a flow rate of 22 to 44mL/kg/min to facilitate peripheral line insertion and intubation. Anesthesia was maintained with isoflurane (0.5 to 2%). Pigs were intubated with an appropriate endotracheal tube (78mm) and ventilated to a tidal volume of 8mL/kg, positive end-expiratory pressure of 5cm H2O, FiO2 of 0.5 and respiratory rate of 14 breaths per minute. Pigs were prepped and draped in the usual sterile fashion prior to flap procurement. Surgical procedure for porcine omentum and TFL flaps procurement were as previously described30. Briefly, the omental flap was procured by midline laparotomy and the left gastroepiploic artery and vein was used as the dominant vascular conduit. The right gastroepiploic vessels were ligated to prevent perfusion flow-through.

The TFL flap was procured with pigs in the lateral decubitus position. The main vascular pedicle was defined by the ascending branch of the lateral circumflex femoral artery and veins. The overlying skin island was removed to produce a pure fascial flap. Following flap detachment, the vascular pedicle was cannulated with 2022 G Angiocath (Becton Dickenson) under direct vision and flushed with 20 U/mL heparin sodium (LEO Pharma, Denmark) in 0.9% normal saline and transported under sterile conditions to the lab.

Porcine flaps were perfusion-decellularized using low-concentration SDS followed by DNase (Sigma Aldrich) reconstituted to a concentration of 10mg/mL, as previously described30. Cannulated flaps were each connected to a perfusion system to allow antegrade perfusion via the arterial inlet at 2ml/min, in which solutions: 0.05% SDS followed by 0.1mg/mL deoxyribonuclease (DNase) were perfused through the flap vasculature with 1phosphate buffered saline (PBS) perfusion in between to remove residual detergent. Flaps were sterilized in 0.1% paracetic acid (PAA) / 4% ethanol (EtOH) (Sigma Aldrich) and then washed in 1PBS prior to recellularization. As described previously30, omental and TFL flaps were perfused with SDS for 2 and 3days, respectively. Following SDS perfusion, flaps were washed with PBS for 24h and then perfused with DNase for 2h, PBS for again for 24h, and finally PAA/EtOH for 3h. With the exception of DNase, each step included an exchange of the submersion fluid to match the given perfusate. For the DNase step, flaps were submerged in fresh PBS.

Commercially available HUVECs (American Type Culture Collection/ATCC, USA) were cultured in EGM-2 (Lonza, Switzerland) supplemented with SingleQuots (Lonza) of Growth Supplements including: FBS 2%, hEGF, hydrocortisone, Gentamicin/Amphotericin-B, VEGF, hFGF-B, R3-IGF-1, ascorbic acid, and heparin (concentrations proprietary). Commercially obtained human bone-marrow derived MSCs (Promocell, Germany) were cultured in MSCGM (Promocell) containing proprietary media supplement and 5% FBS. HMSCs and HUVECs between passage 4 and 6 were used for recellularization. Both cell types were verified for correct functional and phenotype expression. HUVECs expressed CD31/VE-Cadherin using flow cytometry and were functionally capable to undergo angiogenesis. MSCs were CD90/73/44 positive and CD34/45/11b negative using flow cytometry and capable of undergoing trilineage differentiation (Supplementary Fig.1). These findings were consistent with the minimal criteria to define MSCs according to the International Society for Cellular Therapy Criteria47.

All cells were maintained in 150 cm2 dishes until reaching 90% confluency (resulting in approximately 50,000 cells/cm2). Cells were detached from culture vessels with 0.25% trypsinEDTA solution (Gibco) prior to recellularization. Cell media was replaced every other day, and the cultures were maintained in a humidified 95% air/5% CO2 incubator at 37C.

A closed-system bioreactor was set up in an incubator for recellularization within the flap scaffold matrix. We used a modified airtight snap-lid container, previously used for decellularization with a closed-circuit L/S-16 (Masterflex, Fisher Scientific) silicone tubing. The end of the tubing external to the tissue chamber was fitted with a female Luer thread-style panel (Cole-Parmer), which connected to a 3-stop tubing compatible with peristaltic pump (Ismatec, Cole-Parmer) tubing cassette as previously used for perfusion-decellularization. The opposite end of tubing was reconnected to the second port from the tissue chamber to allow closed-loop circulation of medium from tissue chamber into the flap via the arterial cannula at a flow rate of 2mL/min. Just proximal to the tissue chamber, silicone tubing was connected to a three-way stopcock (Baxter, USA). The chamber was filled with 200mL of EGM-2 media, which was primed through the tubing to remove air bubbles. Decellularized flaps were perfused with EGM-2 at 2mL/min in conventional cell culture incubator at standard conditions (95% air/5% CO2) overnight before cell seeding to equilibrate flaps with culture medium.

Cell seeding was performed as follows: HUVECs and human bone-marrow derived MSCs were lifted from tissue culture plastic with 0.25% trypsin and centrifuged at 500g for 5min. The resultant cell pellet was resuspended in 10mL media, strained with 75m pore mesh, and counted via automated hemocytometer (Vi-Cell XR, Beckman Coulter). A total of 8107 cells, divided equally with 4107 HUVEC co-cultured with 4107 MSCs, were used for recellularization of each scaffold. A combined cell suspension of the two cells were slowly manually injected into the vascular arterial inlet through a three-way stopcock. Following the introduction of cells, flaps were placed in a standard cell culture incubator for 2h of static culture to allow cell attachment. Afterwards, perfusion-culture was initiated with the peristaltic pump (Ismatec, Cole-Parmer) running at 2mL/min for 6days. Media passed through the flap was recovered back into the reservoir using a separate pump channel that drained the bioreactor at an equal rate to the perfusion, allowing for recycling and reuse. Media was exchanged every other day for fresh EGM-2. A total of 750mL of culture medium was used over 6days for each flap.

Native, decellularized, and recellularized tissues were biopsied near the distal margin of the flap, fixed in 10% formalin (Fisher Scientific), embedded in paraffin, and sliced into 5m sections on microtome (Leica Biosystems). Slides of the paraffin-embedded samples were processed for histological and IHC staining. Histologic staining was performed on xylene-deparaffinized slides with the following stains: H&E (Sigma Aldrich), Massons Trichrome (American MasterTech Scientific), and Verhoeff Van Gieson Elastin Stain (Abcam).

For IHC, heat induced antigen retrieval was done with citrate buffer (pH 6.0; Thermo Fisher Scientific) in a 95C autoclave for 10min. Endogenous peroxidases were blocked with a peroxide block (Cardinal Health), and nonspecific binding was blocked with Dako Serum-Free Protein-Block (Agilent). Sections were incubated with the primary antibodies at 4C overnight with dilutions as follows: rabbit polyclonal anti-Collagen IV (Abcam, ab6586, 1:300), rabbit polyclonal anti-Fibronectin (Abcam, ab23751; 1:400); and rabbit polyclonal anti-Laminin (Abcam, ab11575, 1:400) and anti-CD31 (Abcam, ab28364, 1:50) at 4C overnight. Slides were washed three times in PBS with 0.1% Tween and goat anti rabbit IgG HRP-conjugated secondary antibody (ImmPRESS Peroxidase Polymer Reagent, Vector Laboratories) was applied for 30min. Slides were again washed thrice in PBS-Tween and then diaminobenzidine solution (Vector Laboratories) applied for 10min. Slides were counterstained with hematoxylin. After staining, all slides were dehydrated in ethanol to xylene exchange, mounted and imaged on Aperio CS2 Slide Scanner (Leica Biosystems).

Immunofluorescence staining was performed using paraffin embedded sections cut to 5m thickness and deparaffinized using xylene and rehydrated in serial dilutions of ethanol. Tissue sections in were incubated in antigen retrieval buffer (10mM citrate buffer, pH 6.0) at 95C for 10min in an autoclave. Tissue sections were then blocked with 5% blocking serum (goat serum) in 1% bovine serum albumin (BSA) before adding primary antibody. Slides were then incubated with primary antibodies for VE-Cadherin (Abcam, ab33168, 1:100) and vimentin (Abcam, ab92547, dilution 1:200) diluted in 1% BSA at 4C overnight. After washing three times with PBS-Tween, slides were then incubated for 1h at RT in the secondary antibody goat anti-rabbit IgG conjugated with AlexaFluor 647 (Thermo Fisher Scientific, 1:500). Finally, slides were washed three times with PBS-Tween in the dark and counterstained with DAPI (Abcam; 1:5000). Negative controls were used by replacing the primary antibody with the corresponding isotype (IgG) of the primary antibody. Images were taken on a Leica SP8 confocal microscope with LAS X software (Leica Biosystems) installed.

Tissue pieces (~3040mg) were obtained by punch biopsy tool and dried in 60C oven overnight. Dried tissue pieces were digested in papain solution at 65C for 18h. Corresponding native flap tissues were dried and digested in parallel as controls. Papain (Sigma Aldrich, 16 units/mg protein) 1530mg/mL stock was solubilized to working concentration of 0.1mg/ml in 0.1M phosphate buffer (pH 6.0), with 5mM cysteine hydrochloride (Sigma Aldrich), and 5mM EDTA (Sigma Aldrich). The lysates were used for detection of sulfated glycosaminoglycan (sGAG) and DNA content. The Blyscan Sulfated GAG Assay kit (Biocolor) was used to measure sGAG according to manufacturers instruction. Briefly, tissue specimen lysates were mixed with Blyscan Dye Reagent to bind the GAG for 1h at room temperature. The GAG-dye complex was then collected by centrifugation at 10,000g. After the supernatant was removed and the tube drained, Dissociation Reagent was added and 100l of analyte solution was transferred to a 96-well plate. Absorbance against the background control was obtained at a wavelength of 656nm with a SpectraMax spectrophotometer (Molecular Devices). GAG amount was interpolated from a standard curve (05g) using a known GAG standard provided in the kit. Final GAG content was standardized to the total dry tissue mass (mg) used for assay.

For DNA content quantitation, the tissue lysate following papain digestion (above) was used. The Quant-iT PicoGreen dsDNA Assay Kit (Invitrogen) was used to measure DNA content according to manufacturers instruction. Fluorescence reading (excitation: 485nm and emission: 528nm) was taken on a plate reader (Cytation 5, Biotek), and the absolute amount of DNA (ng) was quantified against a lambda DNA standard curve (01000ng) provided by the manufacturer; final DNA content was standardized to total dry tissue mass (mg) used for assay.

All statistical analysis was performed using GraphPad Prism, version 9.0 (GraphPad, Inc.). Statistical analyses was conducted with multiple unpaired t test with a significance level of p<0.05. Values are presented as mean, with S.D. unless stated otherwise.

Follow this link:
Bioengineering of vascularized porcine flaps using perfusion-recellularization | Scientific Reports - Nature.com

Recommendation and review posted by G. Smith

Research of extraordinary scope and rigorDan Schwartz honored by American Chemical Society – University of Colorado Boulder

Posted: April 4, 2024 at 2:42 am

Photo caption: The Schwartz lab discovered that molecules move around on surfaces via a complex type of motion involving crawling, hoppingand flying.

Professor Dan Schwartz

Professor Daniel K. Schwartz has been honored with the prestigious American Chemical Society (ACS) Division of Colloid and Surface Chemistry 2024 Langmuir Lectureship award. He was nominated by his colleagues for significant contributions to the field of colloid and interface science.

Colloids are mixtures in which one substance is finely dispersed in another substance. Interface science refers to the boundaries between different phases of matter, such as between two unmixable liquids, or between a liquid and a solid.

Schwartz, a professor in CU Boulders Department of Chemical and Biological Engineering, said the award was significant for several reasons.

Most importantly, it recognizes the excellence of research performed by my PhD students and postdocs, past and present, he said. The recognition is also special because it is sponsored jointly by the ACS Division of Colloid and Surface Chemistry and the ACS journal Langmuir, both of which are very close to my heart. The namesake of the award, Irving Langmuir, a Nobel laureate and the foundational figure of surface science, is a long-time scientific hero of mine.

Schwartz will receive a commemorative plaque, complimentary registration and reimbursement for travel expenses to the ACS fall 2024 meeting and a $3,000 award. He will also deliver a special lecture at the ACS fall 2024 symposium.

Schwartzs colloid and interface science research carries significant practical implications for various fields. These include membrane-separation processes and biocatalysis applications such as water purification, wastewater treatment, food and beverage processing and pharmaceutical manufacturing. His work also extends to chemical production as well as environmental remediation and biofuel synthesis.

Dans contributions to fundamental understanding of dynamic interfacial phenomena are extraordinary, the nominators said in a letter to the selection committee. He has provided new windows into monolayers at interfaces, on solid boundaries and new approaches to understanding fundamental transport of confined molecules, nanoparticles and active particles in porous media. This work is of extraordinary scope and rigor.

The award also entails an expectation that Schwartz will submit a feature article for publication in Langmuir within six months following his lectureship presentation.

It is incredibly satisfying to share the award with my PhDs and postdocs, Schwartz said. Im eagerly looking forward to the opportunity to describe their work to the award lecture audience in August.

Read the original here:
Research of extraordinary scope and rigorDan Schwartz honored by American Chemical Society - University of Colorado Boulder

Recommendation and review posted by G. Smith

New tools reveal how genes work and cells organize – EurekAlert

Posted: April 4, 2024 at 2:42 am

image:

Circular dichroism showing folding of RNA into G-quadruplexes at different temperatures

Credit: Luige et al. 2024

Proteins binding to RNA are important in many processes in the cell and can mediate a range of biological functions. A specialized structure in both DNA and RNA, the G-quadruplex, are regulatory elements involved in gene expression in both DNA and RNA. In the present work the researchers use theoretical predictions and molecular biology experiments to show that many chromatin-binding proteins bind to RNA G-quadruplexes. With this information they can classify proteins based on their potential to bind RNA G-quadruplexes.

The study uses a combination of experimental identification of RNA G-quadruplex-binding proteins and computational methods to build a prediction tool that identify the probability that a protein binds to RNA G-quadruplexes. The findings show that predicted proteins show a high degree of protein disorder and hydrophilicity, suggesting an involvement in both transcription and phase-separation into membrane-less organelles.

Ulf roms group has previously shown that RNA-DNA dual binding proteins are likely to have an involvement in the DNA damage response, linking DNA and RNA binding properties to a number of proteins. In the new study, the researchers expanded the knowledge of RNA-binding proteins to identify RNA G-quadruplex binding proteins.

The researchers have also developed a computational tool to assess RNA G-quadruplex-binding potential of proteins that can be accessed athttp://service.tartaglialab.com/new_submission/clever_G4_classifier.

With these new results, the researchers identify properties of protein-RNA interactions, and provide means to identify G-quadruplex binding properties that can potentially be targeted therapeutically in disease.

The findings have just been published inNature Communications.

Nature Communications

Cells

22-Mar-2024

Disclaimer: AAAS and EurekAlert! are not responsible for the accuracy of news releases posted to EurekAlert! by contributing institutions or for the use of any information through the EurekAlert system.

Link:
New tools reveal how genes work and cells organize - EurekAlert

Recommendation and review posted by G. Smith

Learn About Undergraduate Research Opportunities in Chemistry April 9 – University of Arkansas Newswire

Posted: April 4, 2024 at 2:42 am

Chemistry Club

The Chemistry Club would like to invite current members and any undergraduate student interested in chemistry/biochemistry research or looking to join a lab for a research exposition Tuesday, April 9, from 5-6:30 p.m. at CORD 127.

The Chemistry Club would like to invite current members and any undergraduate student interested in chemistry/biochemistry research or looking to join a lab for a research expositionfrom 5-6:30 p.m. Tuesday, April 9, at the Cordia Harrington Center, room 127. Food will be provided!

Students from any major can come and hear firsthand from other undergraduates and graduate students about the exciting research happening in the Chemistry Department, as well as their experiences in lab and advice on joining a lab. There will be presentations and posters showcasing the variety of opportunities for undergraduates to get involved in research. Students already in a lab are welcome to join to hear more about department research, and those interested in eventually completing an honors thesis in chemistry or biochemistry are highly encouraged to attend. You do not have to be a chemistry/biochemistry major to attend, as several labs in the department welcomingly take students of other majors!

This event is supported by the Student Activities Fee as a funded event by the Associated Student Government and is free to all currently enrolled University of Arkansas, Fayetteville, students who pay the student activities fee. This event is held in a venue that meets ADA standards. Individuals with disabilities are encouraged to attend this event. If you require a reasonable accommodation in order to participate in this event, please contact Ethan Batey at jebatey@uark.edu or (307)-277-2812 by five business days prior to the event.

Read the original post:
Learn About Undergraduate Research Opportunities in Chemistry April 9 - University of Arkansas Newswire

Recommendation and review posted by G. Smith


Page 40«..1020..39404142..5060..»