
HT Don Rule today as well as the ENTIRE Pharmacogenomics Advisory Group that I am a proud member of.

HT Don Rule today as well as the ENTIRE Pharmacogenomics Advisory Group that I am a proud member of.
I kept beating myself up, trying to figure out why the largest food/products company in the world put money in Navigenics. Was it for nutrigenomics? Was it for the captive audience to market products to?
I hold in my hot little hands a copy of the NEJM, March 18th edition. In it there is an article which isn’t even released yet.
I have been harping on this say what you mean. Say what you do. Theme lately.
February 2009 23andMe entered into clinical medical testing of DNA variants which are the exact same variants Myriad Genetics tests for. There is only ONE use for this test. That is a clinical use. When these results are obtained clinical counseling is the standard of care for delivery of these results. Not a flashy webportal……
Minimizing the seriousness of a medical test looked just as awkward by us in the first video as it should be by showing it on a blimp or at a cocktail party or highway billboard sign…..All things that Linda Avey and Anne Woj decided to have their company do….
The Sherpa Says: Misha is correct, Medical Geneticists painted themselves into a corner by harboring in the rare disease port. This allowed people who have no G-dDamn business in medicine, to play doctor at parties and on the internet!
Did anyone see the FDA issuance of the better warning that as many as 14% of patients will not benefit from Plavix/Clopidogrel?

I have been having this debate with a good friend and mentor.

So by now I am certain everyone in the DTC genomics world has seen this BNET story

Has anyone visited or registered for G2C2 at UVA? I have been championing for years, the addition of Physicians’ Assistants and Nurses into the field of Medical Genetics.
I want to congratulate Dr Peter Hulick M.D. Medical Geneticist/Internist.
The afternoon program will additionally showcase:
· Four “prototypes of the future” sessions highlighting the next generation of personalized genomic products, services and activities and moderated by the executive editor of WIRED and author, Thomas “The Death Stare” Goetz.
· The public debut of the BioWeatherMap initiative, a collaboration between scientists and the public using next-generation sequencing platforms to address the fundamental question: “How diverse is the microbial life around us and how can we use that information to our advantage?”
The GET Conference 2010 will take place on Tuesday, April 27, 2010 from 8:00 a.m. – 8:00 p.m. at the Microsoft New England Research and Development Center in Cambridge, Mass. The event will be limited to 200 registrants. To register for the GET Conference 2010, visit http://www.getconference.eventbrite.com/.
Tommy Goetz hates me, but I still will go because, let’s face it, who doesn’t love the
“Howard Stern of Genomics“-Jeff Gulcher
The Sherpa Says: An army of geneticists amassing to deploy clinical useful tools in a virtual setting? Nawh…..

Yeah, yeah, yeah……..common variants don’t work for heart disease…….We got it.
Dr. “Sherpa” – I am confused. “Are you FOR personalized medicine or not?”
“Nor should dated links that no longer apply to the fast evolving and current business/economic climate, technologies and law(s) in differing American States and the international sector be fused – adding to the confusion for neophytes…like me…who, though we are not of your august standing…deserve better from you.
“Is it your belief that ANY executive or Board Member who has a former affiliation is actually acting in the capacity of all former posts/affiliations/occupations”

The Answer: They float a trial balloon in the Merry ‘Ol Land of Oz……
MARK FITZGIBBON: No, I wasn’t aware of those findings, but again using my example I took my test to the doctor. Now, if we need to do more in terms of encouraging people to take these tests to their doctors, we’re already offering a counselling service, an advice service as part of the product offering. Maybe that’s what we’ll do. And this is very much in a pilot stage.”
You know what pisses me off. The blatant stupidity given to hyping one piece of literature and making it seem as if it is true.
What pisses me off more is insinuating that there is some inherent value in a certain single study without prefacing the factors.
Let me tell you who often does that.
1. Nutriceutical salesmen in a Multi Level Marketing Scheme
2. People looking to sell some fancy medical device
3. Pharma companies creating fake journals
4. DTC Genomics companies trying to prove value from their tests……
Don’t believe me? Well, just read the spittoon’s blog post about TRALI.…which is Transfusion Related Acute Lung Injury……
How does this hype occur? First the study….
It starts with a scare
“TRALI is one of the major causes of transfusion-association deaths in the developed world.”-Spitton
Ok. We used to think this was rare and yes, it is more common based on some new agreed standards….. 1 in 300,000 people in some studies…..
Then it continues with baffling science jibberish to make people think you know what you are talking about……..
“One reason TRALI happens is that …… Several triggers for this type of TRALI have been identified. One of these, the HNA-3 antigen, has repeatedly been associated with severe and fatal TRALI reactions. HNA-3 comes in two versions: HNA-3a and HNA-3b…….. The likelihood that a woman will have antibodies against HNA-3 increases with each birth.
The new research found that the different versions of HNA-3 are due to SNP rs2288904 in the SLC44A2 gene. Someone who is GG at this SNP will express only HNA-3a. Someone who is AG will express both the HNA-3a and HNA-3b version. Finally, someone who is AA at rs2288904 will express only HNA-3b. ” -Spittoon
It finishes with a testimonial and a point of sale
“Confused? Here’s an example from my own family that will hopefully make things more clear:
What is wrong with this? It asserts that they would absolutely without a shadow of a doubt be at risk of TRALI……..based on ONE STUDY!!!
And the point of sale?
“(23andMe Complete Edition customers can check their data for rs2288904 using the Browse Raw Data feature.)”
OMG, Holy Crap, I have to know whether I will be at risk for TRALI. Thank you so very much 23andMe! You have solved my life’s problems. Maybe I could get a life alert bracelet with all of the “risks” I have?
Seriously. What would have been nice is a “This is only one study and there is no other replication out there, but, this is interesting EARLY SCIENCE”
We still have not conclusively implicated TRALI to just this…….There is no complete consensus on the absolute pathogenesis of TRALI.
When everyone poo poo’d Warfarin, I became very, very upset. Here was a good clinical case for using PGx tests. Not a great case, but a good case. It was only when I began to think about feasability.

An attractive male/female (depending on doctor) walks into the office.
In order to gain the state license, Navigenics had to meet several requirements, including hire a doctoral-level scientist with expertise in genetic molecular testing, pay a $1,100 fee, and respond to deficiencies cited by inspectors with a plan of correction.
Most important, however, was Navigenics’ conceding to not market its services directly to consumers, as clinical labs are forbidden from doing under state regulations. “They have acknowledged that DTC will not work for them” in New York, Kusel said. “They can only operate through physicians’ orders.”

So like I have said multiple times. Navigenics is AT LEAST a clinical laboratory if not a healthcare provider.
I unwrapped the NEJM this week and to my surprise it has a Lp(a) stuff in it. One of the things we do to prevent heart disease is take family histories. We also check cholesterol levels and include something called a Cardio-CRP. One thing we haven’t been including is a Lp(a). Why? The only data I see that is good on this is on women.
As I begin to enter year 3 of this blog I have refined my thinking and working to effect change. Personalized medicine delivery will change soon, so will personal genomics. I hope to create some of this next year. Until then, Merry Christmas everybody!
The Sherpa Says: And to All a Good Night!
“With breast cancer as an example, we examined the combined effect of uncertainties in population incidence rates, genotype frequency, effect sizes, and models of joint effects among genetic variants on lifetime risk estimates. We performed simulations to estimate lifetime breast cancer risk for carriers and noncarriers of genetic variants. We derived population-based cancer incidence rates from Surveillance, Epidemiology, and End Results (SEER) Program and comparative international data. We used data for non-Hispanic white women from 2003 to 2005. We derived genotype frequencies and effect sizes from published GWAS and meta-analyses. For a single genetic variant in FGFR2 gene (rs2981582), combination of uncertainty in these parameters produced risk estimates where upper and lower 95% simulation intervals differed by more than 3-fold. “
Remember this? From GenomeWeb
“After extensive fact-finding, consultation, and analysis, the committee found significant gaps in the US system of oversight of genetic testing that can lead to harms,” SACGHS states in the report. “The committee also identified novel opportunities that would enhance oversight.”
What are these novel opportunities to enhance oversight?
“As reported by Pharmacogenomics Reporter in February, the establishment of a mandatory, web-based registry for all laboratory-developed tests is one of the main vehicles the committee is proposing in order to improve how the federal government regulates genetic tests [see PGx Reporter 02-20-2008]. “
The 21st Meeting of SACGHS will occur in February of 2010. I wonder if this recommendation has gone on deaf ears. With all the turmoil surrounding health reform, will HHS take genetic test regulation up? One of 3 or 4 things may happen.
1. Health reform happens, billions flow into HHS and they form a committee to set the SACGHS recommended registry up.
2. Health reform happens, they are so busy that this gets queued.
3. Health reform doesn’t happen. Nor does the Registry.
4. Health reform doesn’t happen, thus the HHS has the time and attention to set up this registry.
But what I really want to know is: “Will the HHS including DTC genomic testing give these companies a perceived seal of approval?”
Better yet, will these companies be listed?
PWC has said Personalized Medicine will grow at 11% (How the hell they come up with that figure g-d only knows) Do I think DTC genomics will be included in the growth? Probably not. This type of testing will not grow until it is less than 100 USD.
The Sherpa Says: Like I said before, unless PM can cure cancer or prevent HIV it is likely to be difficult to sell. No matter how many meetings Harvard/Scripps/Etc has. What needs to happen is promotion of physicians (like my group) who are actually implementing PM.